Next:
Summary
Up:
DeepForest ver.1.0 Manual
Previous:
DeepForest ver.1.0 Manual
DeepForest
: a Molecular Evolutionary Analysis System
Summary
Concepts of
DeepForest
DeepForest
: a tool as a language
What is logic programming?
Syntax of KL1
Variable
List
Pragma for priority
Provided predicates and those applications
Provided modules
Provided predicates
Application programs
Tree reconstruction
Tree superimposition
Database operation
Searching database
Generation of huge bibliography database automatically from sequence database
Semi-automatic multiple alignment
Multiple alignment with considerably diverged sequence data
Tree of Minimum Gap Distance (MGD) matrix
Tree of amino acid composition
Automatic tree annotation from a given sequence database
Parallel execution
Benefits and problems
Parallel computing in the maximum likelihood method
Implementation of parallel computing
Experimentation of the maximum likelihood method in parallel computation
Results of the maximum likelihood method in parallel computation
Efficiency of parallel computation in
DeepForest
Implementation in a distributed environment
Merger having tree structure
How to get prototype version of
DeepForest
Satoshi OOta
1999-03-06